Medicare Quality Reporting Incentive programs Manual (Pub. 100-22), Ch. 3 § 20
Contractor Payment Instructions for the Physician Quality Reporting System
20 - Contractor Payment Instructions for the Physician Quality Reporting System
(PQRS)
(Rev. 11, Issued: 03-26-13, Effective: 06-25-12, Implementation: 06-25-12)
The Medicare contractors will receive recurring update notification change requests for PQRS incentive
payments. For additional information on this program, see Chapter 1 of this manual.
Contractors shall make the PQRS incentive payments to a group practice, or individual for a private practice,
associated with the Tax Identification Number (TIN) identified on the PQRS Incentive Payment file. There
will be an annual payment file, developed by a CMS specialty contractor, containing the following
information:
• Eligible Professional (EP) Contractor Number
• EP Tax ID Number
• EP Incentive Amount
• Incentive Report Start Date
• Incentive Report End Date
The CMS specialty contractor shall include a header record on the payment file to identify the type of
incentive file and reporting period. PQ denotes PQRS. The file transfer process is as follows: (1) The
specialty contractor shall transmit the Incentive Payment file to the CDS and HP EDC in Extended Binary
Coded Decimal Interchange Code (EBCDIC); (2) MCS shall segregate the Incentive Payment file
MAC/carrier workload number and load into the appropriate instance of MCS; (3) Contractors shall retrieve
the file upon direction from CMS after the file is available at the datacenter.
The time frame that Medicare contractors have for completing the PQRS Incentive payments is
approximately thirty calendar days. The exact payment beginning and end dates will be in the recurring
update notification. There are 4 possible payment months each year: May, August, September, and October.
CMS shall add, at its discretion, up to (1) one extra payment cycle per payment year. The Carrier/MACs will
be notified via a recurring update notification change request which month the respective incentive
payments shall be made. Also, there is the potential for a supplemental payment file that could be provided
at a later date, if CMS determines a need for making a supplemental payment. If needed, a supplemental
payment would be made in one of these 4 payment months.