State Operations Manual (Pub. 100-07), Ch. 6 § 6000
Background
6000 - Background
(Rev. 230; Issued: 07-11-25; Effective: 07-11-25; Implementation: 07-11-25)
The Clinical Laboratory Improvement Amendments of 1988 (CLIA), Public Law 100-
578, amended §353 of the Public Health Service Act (PHSA) (42 U.S.C. 263a), to
extend jurisdiction of the Department of Health and Human Services (HHS) to regulate
all laboratories that test human specimens for the purpose of providing information for
diagnosis, prevention, or treatment of any disease or impairment of, or the assessment
of the health of, human beings. Except as provided at 42 CFR 493.3, entities that meet
the definition of a laboratory at 42 CFR 493.2 must meet applicable Federal
requirements and have a CLIA certificate in order to operate.
Regulations implementing CLIA are codified under 42 CFR Part 493. These regulations
require that all laboratories or entities that perform laboratory testing:
• Pay user fees as assessed by CMS to finance the entire cost of administering
the CLIA program;
• Submit specific information to HHS or its designee;
• Comply with specific administrative and program requirements;
• Submit to surveys to assess compliance with CLIA requirements;
• Be subject to specified enforcement actions; and
• Apply for CLIA certificates based on the complexity of testing performed in
the laboratory or based on accreditation by a CMS-approved accreditation
organization; or
• Be licensed or approved in accordance with State requirements if located
in a State with a CMS approved State laboratory licensure program.
Section 6141 of the Omnibus Budget Reconciliation Act of 1989, Public Law 101-239,
requires that laboratories participating in the Medicare program comply with CLIA
requirements. Therefore, all laboratories, with the exception of laboratories located in
and licensed or approved by a State with a CMS-approved State laboratory licensure
program (CLIA-exempt laboratories) must obtain a CLIA certificate to operate and to be
eligible for payment under Medicare and Medicaid. Although CLIA-exempt
laboratories do not need a CLIA certificate to operate, they are assigned a CLIA
identification number for Medicare and Medicaid payment purposes.