13 CSR 70-94.010
Independent Rural Health Clinic Program
PURPOSE: This rule establishes the regulatory basis for Title XIX
Medicaid payment for Independent Rural Health Clinic Services.
(1) Authority. This is the payment methodology used to reim
burse providers in the MO HealthNet Independent Rural Health
Clinic (RHC) program.
(2) Qualifications. For a clinic to qualify for participation in the
MO HealthNet independent RHC program, the clinic must be
an independent facility, which means that the clinic may not
be part of a hospital. However, a clinic may be located in the
same building as a hospital, as long as there is no administra
tive, organizational, financial, or other connection between
the clinic and the hospital.
(3) General Principles.
(A) The MO HealthNet program shall reimburse independent
RHC providers based on the reasonable cost of RHC-covered
services related to the care of MO HealthNet participants
(within program limitations) less any copayment or other third
party liability amounts which may be due from MO HealthNet
participants.
(B) Reasonable costs shall be determined by the MO
HealthNet Division based on desk review of the applicable cost
reports and shall be subject to adjustment based on field audit.
Reasonable costs shall not exceed the Medicare cost principles
set forth in 42 CFR part 413.
(4) Definitions. The following definitions shall apply for the
purpose of this rule:
(A) Desk review. The MO HealthNet Division’s review of a
provider’s cost report without on-site audit;
(B) Division. Unless otherwise designated, division refers to
the MO HealthNet Division, the division of the Department
of Social Services charged with administration of the MO
HealthNet program;
(C) Facility fiscal year. A facility’s twelve- (12-) month fiscal
reporting period;
(D) Generally accepted accounting principles (GAAP).
Accounting conventions, rules, and procedures necessary to
describe accepted accounting practice at a particular time
promulgated by the authoritative body establishing those
principles;
(E) Medicaid cost report. The documents used for the pur
pose of reporting the cost of rendering both covered and
non-covered services for the facility’s fiscal year shall be the
Medicare cost report forms CMS-222-92 and all worksheets sup
plied by the division. If the Medicare CMS-222-92 is superseded
by an alternate Medicare developed cost reporting tool during
a facility’s fiscal year, that tool must be used for the facility’s
fiscal year; and
(F) Provider or facility. An independent RHC with a valid
MO HealthNet participation agreement in effect with the
Department of Social Services for the purpose of providing RHC
services to Title XIX eligible participants.
(5) Administrative Actions.
(A) Annual Cost Report.
1. Each independent RHC shall complete a Medicaid cost
report for the RHC’s twelve- (12-) month fiscal period.
2. Each RHC is required to complete and submit to the
division an Annual Cost Report, including all worksheets, at
tachments, schedules, and requests for additional information
from the division. The cost report shall be submitted on forms
provided by the division for that purpose.
A. An independent RHC may be exempt from filing a
Medicaid cost report if there is no MO HealthNet reimburse
ment for the reporting period and the facility does not plan to
bill the MO HealthNet program for any claims for the reporting
period. The facility must submit a request to the division to
waive the cost report filing requirement within five (5) calen
dar months after the close of the facility’s reporting period. To
request an exemption for the cost report filing requirement,
the following information must be submitted to MHD for re
view and approval:
(I) A Low or No Missouri Medicaid Utilization Waiver
Request Form. This form may be obtained from the division.
The form must be fully completed and signed by an officer or
administrator; and
(II) Worksheet S series of the Medicare Cost Report.
The applicable parts of the Worksheet S must be completed
and signed by an officer or administrator.
3. All cost reports shall be completed in accordance with
the requirements of this rule and the cost report instructions.
Financial reporting shall adhere to GAAP except as otherwise
specifically indicated in this rule.
4. The cost report shall be submitted within five (5) calen
dar months after the close of the reporting period. An exten
sion may be granted upon the request of the RHC and the ap
proval of the division with an agreed upon date of completion.
The request must be received in writing by the division prior
to the end of the five (5) calendar-month period after the close
of the reporting period.
5. In a change of ownership, the cost report for the closing
period must be submitted within forty-five (45) calendar days
of the effective date of the change of ownership, unless the
change in ownership coincides with the seller’s fiscal year end,
in which case the cost report must be submitted within five (5)
months after the close of the reporting period. No extensions
in the submitting of cost reports shall be granted when a
change in ownership has occurred.
6. Cost reports shall be submitted and certified by an offi
cer or administrator of the provider. Failure to file a cost report
within the prescribed period, except as expressly extended in
writing by the state agency, may result in the imposition of
sanctions as described in 13 CSR 70-3.030.
7. Authenticated copies of agreements and other signifi
cant documents related to the provider’s operation and provi
sion of care to MO HealthNet participants must be attached to
the cost report at the time of filing unless current and accurate
copies have already been filed with the division. Material
which must be submitted includes, but is not limited to, the
following:
A. Audit, review, or compilation statement prepared by
an independent accountant, including disclosure statements
and management letter;
B. Contracts or agreements involving the purchase of fa
cilities or equipment during the past five (5) years if requested
by the division, the department, or its agents;
C. Contracts or agreements with owners or related par
ties;
D. Contracts with consultants;
E. Schedule detailing all grants, gifts, and income from
endowments, including amounts, restrictions, and use;
F. Documentation of expenditures, by line item, made
under all restricted and unrestricted grants, gifts, or endow
ments;
G. Statement verifying the restrictions as specified by
the donor, prior to donation, for all restricted grants;
H. Leases or rental agreements, or both, related to the
activities of the provider;
I. Management contracts;
J. Provider of service contracts; and
K. Working trial balance actually used to prepare cost
report with line number tracing notations or similar identifi
cations.
8. Under no circumstance will the division accept amended
cost reports for final settlement determination or adjustment
after the date of the division’s notification of the final settle
ment amount.
(B) Records.
1. Maintenance and availability of records.
A. A provider must keep records in accordance with
GAAP and maintain sufficient internal control and documen
tation to satisfy audit requirements and other requirements of
this rule, including reasonable requests by the division or its
authorized agent for additional information.
B. Adequate documentation for all line items on the
cost report shall be maintained by a provider. Upon request, all
original documentation and records must be made available
for review by the division or its authorized agent at the same
site at which the services were provided. Copies of documen
tation and records shall be submitted to the division or its
authorized agent upon request.
C. Records of related organization, as defined by 42 CFR
413.17, must be available upon demand.
D. The division shall retain all uniform cost reports sub
mitted by the independent RHCs for seven (7) years after the
final settlement relating to a cost report is finalized, including
the resolution of any subsequent appeals or other administra
tive actions pertaining to the cost report.
E. Each facility shall retain all financial information,
data, and records relating to the operation and reimbursement
of the facility for seven (7) years after the final settlement relat
ing to a cost report is finalized, including the resolution of any
subsequent appeals or other administrative actions pertaining
to the cost report, and will maintain those reports pursuant to
the record-keeping requirements of 42 CFR 413.20.
2. Adequacy of records.
A. The division may suspend reimbursement or reduce
payments to the appropriate fee schedule amounts if it deter
mines that the RHC does not maintain records that provide an
adequate basis to determine payments under MO HealthNet.
B. The suspension or reduction continues until the RHC
demonstrates to the division’s satisfaction that it does, and will
continue to, maintain adequate records.
(C) Audits.
1. Any cost report submitted may be subject to field audit
by the division or its authorized agent.
2. A provider shall have available at the field audit loca
tion one (1) or more knowledgeable persons authorized by the
provider and capable of explaining the provider’s accounting
and control system and cost report preparation, including all
attachments and allocations.
3. If a provider maintains any records or documentation
at a location which is not the same as the site where services
were provided, the provider shall transfer the records to the
same facility at which the services were provided, or the pro
vider must reimburse the division or its authorized agent for
reasonable travel costs necessary to perform any part of the
field audit in any off-site location, if the location is acceptable
to the division.
(D) Change in Provider Status. The next payment due the
provider after the division has received the notification of the
termination of participation in the MO HealthNet program or
change of ownership may be held by the division until the
cost report is filed. Upon receipt of a cost report prepared in
accordance with this rule, the payments that were withheld
will be released.
(6) Nonallowable Costs. Cost not reasonably related to RHC ser
vices shall not be included in a provider’s costs. Nonallowable
cost areas include, but are not limited to, the following:
(A) Grants, gifts and income from endowments will be de
ducted from total operating costs;
(B) Bad debts, charity, and courtesy allowances;
(C) Return on equity capital;
(D) Capital cost increases due solely to changes in ownership;
(E) Amortization on intangible assets, such as goodwill,
leasehold rights, covenants, but excluding organizational
costs;
(F) Attorney fees related to litigation involving state, local,
or federal governmental entities and attorney’s fees which are
not related to the provision of RHC services, such as litigation
related to disputes between or among owners, operators, or
administrators;
(G) Central office or pooled costs not attributable to the effi
cient and economical operation of the facility;
(H) Costs such as legal fees, accounting and administration
costs, travel costs, and the costs of feasibility studies which are
attributable to the negotiation or settlement of the sale or pur
chase of any capital asset by acquisition or merger for which
any payment has been previously made under the program;
(I) Late charges and penalties;
(J) Finder’s fees;
(K) Fund-raising expenses;
(L) Interest expense on intangible assets;
(M) Religious items or supplies or services of a primarily re
ligious nature performed by priests, rabbis, ministers, or other
similar types of professionals. Costs associated with portions
of the physical plant used primarily for religious functions are
also nonallowable;
(N) Research costs;
(O) Salaries, wages, or fees paid to nonworking officers, em
ployees, or consultants;
(P) Value of services (imputed or actual) rendered by nonpaid
workers or volunteers; and
(Q) Costs of services performed in a satellite clinic, which
does not have a valid MO HealthNet participation agreement
with the Department of Social Services for the purpose of pro
viding RHC services to Title XIX-eligible participants.
(7) Interim Payments.
(A) Independent RHCs, unless otherwise limited by regula
tion, shall be reimbursed on an interim basis by MO HealthNet
at the Medicare RHC rate. Interim payments shall be reduced
by copayments and other third party liabilities.
(B) An independent RHC contracted with a MO HealthNet
managed care health plan shall be eligible for supplemen
tal reimbursement up to its interim Medicare RHC rate. The
supplemental reimbursement shall make up the difference
between what the independent RHC would have been paid
by the division based on the independent RHC’s Medicare rate
and the total managed care health plan payments made to the
clinic during the reporting period for covered services rendered
to MO HealthNet managed care participants as set forth in the
Managed Care contract. The supplemental reimbursement
shall occur pursuant to the schedule agreed to by the division
and the independent RHC but shall occur no less frequently
than every four (4) months. Supplemental reimbursement shall
be requested by the independent RHC on forms provided by
the division. Supplemental reimbursement for managed care
charges shall be considered interim reimbursement of the in
dependent RHC’s MO HealthNet costs.
(8) Final Settlement.
(A) Final Settlement Determination. The state agency shall
perform an annual desk review of the Medicaid cost reports for
each RHC’s fiscal year and shall make the necessary payment
adjustments (i.e., an additional payment or a recoupment), in
order that the RHC’s net reimbursement shall equal reasonable
costs as described in this section.
1. The total reimbursement amount due the RHC for cov
ered services furnished to MO HealthNet participants is based
on the allowable costs from the Medicaid cost report and is
calculated as follows:
A. The average cost per visit is calculated by dividing
the total allowable cost incurred for the reporting period by
total visits for RHC services furnished during this period. The
average cost per visit is subject to tests of reasonableness
which may be established in accordance with this rule or in
corporated in the Allowable Cost per visit as determined on
Worksheet C, Part I, line 9 of the cost report; and
B. The total cost of RHC services furnished to MO
HealthNet participants is calculated by multiplying the allow
able cost per visit by the number of MO HealthNet visits for
covered RHC services.
2. The total reimbursable cost is compared to the total in
terim payments made to the RHC during the reporting period
for MO HealthNet participants to determine the amount of the
final settlement owed to or due from the RHC. The total interim
payments include the amount paid by the division as deter
mined from the division’s Medicaid Management Information
System (MMIS) reports, the health plan payments as set forth in
the Managed Care contract, and third party liability payments.
3. The total reimbursement will be subject to adjustment
based on the results of a field audit which may be conducted
by the MO HealthNet Division or its contracted agents.
(B) Notification of Final Settlement.
1. The division will notify the RHC by letter of a cost report
final settlement after the division completes the desk review
of the cost report. The division’s notification letter will in
clude the calculation of the final settlement and a Settlement
Agreement, which the facility will sign and return to the divi
sion indicating it agrees with the final settlement calculation.
The division’s written notice to the RHC shall indicate if the
final settlement results in the following:
A. Underpayments. If the total reimbursement due the
RHC exceeds the interim payments made for the reporting
period, the division makes a lump-sum payment to the RHC
to bring total payments into agreement with total reimburse
ment due the RHC; and
B. Overpayments. If the total interim payments made to
a RHC for the reporting period exceed the total reimbursement
due the RHC for the period, the division arranges with the RHC
for repayment of the overpayment either by having it offset
against the RHC’s subsequent interim payments, having the
RHC repay by sending the division a payment, or a combina
tion of offset and payment.
2. The RHC shall review the division’s notification letter and
attachments and respond with a signed Settlement Agreement
indicating it has accepted the final settlement within fifteen
(15) calendar days of receiving the final settlement letter. If the
RHC believes revisions to the division’s desk review and final
settlement are necessary before it can accept the settlement,
it must submit additional, amended, or corrected data within
the fifteen- (15-) day deadline. Data received from the RHC
after the fifteen- (15-) day deadline may not be considered by
the division in determining if revisions to the final settlement
are needed unless the RHC requests and receives an extension
for submitting additional information prior to the end of the
fifteen- (15-) day deadline. If the fifteen- (15-) day deadline
passes without a response from the provider, the division will
proceed with processing the final settlement as set forth in the
division’s notification letter, and the final settlement shall be
deemed final. The division may not accept an amended cost
report or any other additional information to revise the cost
report or final settlement after the final settlement is finalized.
(C) The annual desk review will be subject to adjustment
based on the results of a field audit which may be conducted
by the division or its contracted agents.
(9) Payment Assurance.
(A) The state will pay each RHC, which furnishes the services
in accordance with the requirements of the state plan, the
amount determined for services furnished by the RHC accord
ing to the standards and methods set forth in the regulations
implementing the RHC Reimbursement Program.
(B) RHC services provided for those participants having avail
able Medicare benefits shall be reimbursed by MO HealthNet to
the extent of the coinsurance and deductible as imposed under
Title XVIII.
(C) Where third-party payment is involved, MO HealthNet
will be the payer of last resort.
(D) Regardless of changes of ownership, management, con
trol, leasehold interests by whatever form for any RHC previ
ously certified for participation in the MO HealthNet program,
the division will continue to make all the Title XIX payments
directly to the entity with the RHC’s current provider number
and hold the entity with the current provider number respon
sible for all MO HealthNet liabilities.
AUTHORITY: sections 208.201 and 660.017, RSMo 2016.* Emergency
rule filed Aug. 20, 1993, effective Sept. 18, 1993, expired Jan. 15,
1994. Emergency rule filed Jan. 19, 1994, effective Jan. 29, 1994,
expired Jan. 31, 1994. Original rule filed Aug. 20, 1993, effective
Jan. 31, 1994. Amended: Filed Aug. 15, 2008, effective Feb. 28, 2009.
Amended: Filed Oct. 17, 2018, effective June 30, 2019.
*Original authority: 208.201, RSMo 1987, amended 2007 and 660.017, RSMo 1993,
amended 1995.